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《Archives of Virology》 期刊 —— Complete genome sequence of a novel partitivirus with a dsRNA3 segment, isolated from Fusarium commune strain CP-SX-3 causing strawberry root rot（图）
镰刀菌 真菌病毒 种类 多样性
2024/6/14
近日，辽宁省果树科学研究所植保课题赵雨萌实习研究员为第一作者，在《Archives of Virology》发表了题为《Complete genome sequence of a novel partitivirus with a dsRNA3 segment, isolated from Fusarium commune strain CP-SX-3 causing strawberry roo...
An integrated platform and meta-learner for feature engineering machine learning analysis and modeling of DNA, RNA and protein sequence data
python 工具包 蛋白质序列
2024/5/17
一个全面和通用的基于python的工具包，集成了特征提取、聚类、归一化、选择、降维、预测器构建、最佳描述符/模型选择、集成学习和DNA、RNA和蛋白质序列结果可视化的功能。用户只需要上传自己的数据集，并从中计算出自己需要的功能，所有必要的程序和优化设置都由软件自动完成。iLearn包括DNA、RNA和蛋白质的各种描述符，支持四种特征输出格式，以便于直接使用输出或与其他计算工具通信。总的来说，iLe...
A comprehensive and automated machine-learning platform for nucleic acid and protein sequence analysis, prediction and visualization
棉花 纤维品质 QTL 遗传基因组
2024/4/16
本研究在sGK9708×0-153、LMY22×LY343、鲁绵研28×新陆早24等多个重组自交系群体中通过综合考评表型变异和共有置信区间筛选主效QTL，结果表明在A04、A07、A08和D08染色体上存在重要的纤维品质相关QTL。其中，通过SGK9708×0-153群体的转录组数据在纤维长度和强度QTL中分别检测到50和48个候选基因。这些基因的共表达网络模块在多个RIL群体中的基因对之间表现出...
SPDE: A Multi-functional Software for Sequence Processing and Data 2 Extraction
SPDE Sequence Processing Data Extraction
2023/6/2
Sequence Processing and Data Extraction (SPDE) has eight modules comprising 100 basic functions ranging from sequence extraction, format conversion to data reorganization and mining, and all of these ...
Effects of aging and freezing/thawing sequence on quality attributes of bovine Mm. gluteus medius and biceps femoris
Aging Freezing Glutathione Peroxidase Purge Thawing
2017/3/9
The effects of aging and freezing/thawing sequence on color, physicochemical, and enzymatic characteristics of two beef muscles (Mm. gluteus medius, GM and biceps femoris, BF) were evaluated.
Determination of Genetic Diversity Using 15 Simple Sequence Repeats Markers in Long Term Selected Japanese Quail Lines
Simple Sequence Repeats Selection Breeding Genetic Diversity Quail
2016/12/28
Japanese quail is still used as a model for poultry research because of their usefulness as laying, meat, and laboratory animals. Microsatellite markers are the most widely used molecular markers, due...
Bioassay and Phylogeny of Five Iranian Isolates of Cucumber mosaic virus from Different Hosts Based on CP Gene Sequence
CMV coat protein genetic variation phylogeny symptomology subgroup I
2015/10/9
Using double-antibody sandwich enzyme-linked immunosorbent assay (DAS-ELISA), Cucumber mosaic virus (CMV)
was detected in 31 out of 132 symptomatic leaf samples collected from different hosts of Urm...
Mitochondrial D-loop sequence variation among Hucul horse
genetic diversity horse mitochondrial DNA phylogeny
2015/6/24
Genetic variation in the Czech Hucul horse population was analyzed using a sequence analysis of the D-loop region of mitochondrial DNA. One hundred and sixty-five Hucul horses were tested. Sequencing ...
Relationship between the insertion/deletion polymorphism within the promoter and the intron 1 sequence of the PRNP gene and milk performance traits in cattle
Polish Holstein-Friesian cattle PRNP polymorphism milk performance traits QTL marker
2015/6/9
Current studies on the prion protein (PRNP) gene polymorphism focus primarily on the causative mutations that influence BSE susceptibility in cattle. The specific genetic structure determined by the i...
Isolation, cloning and sequence analysis of lactate dehydrogenase gene from Theileria annulata may lead to design of new antitheilerial drugs
Theileria annulata theileriosis antitheilerials lactate dehydrogenase gene cloning
2015/4/15
Theileriosis is a serious animal disease that is transmitted by ticks. Theileria species are tick-borne obligate intracellular protozoan parasites that cause severe and mild infections in their hosts....
Variability of PSPAL1 (phenylalanine ammonia-lyase gene-1) proximal promoter sequence and expression in pea challenged with Mycosphaerella pinodes
expression Mycosphaerella pinodes phenylalanine ammonia-lyase gene-1 Pisum sativum polymorphism resistance
2014/7/9
Part of the PSPAL1 gene (corresponding to the proximal promoter, exon 1 and intron) from eight pea varieties was sequenced and compared to the published sequence of PSPAL1 gene from Midoriusui cultiva...
The application of high resolution melting in the analysis of simple sequence repeat and single nucleotide polymorphism markers in a pea (Pisum sativum L.) population
genotyping high resolution melting molecular markers Pisum sativum L.
2014/7/9
The aim of this study was to verify the high resolution melting (HRM) method in the analysis of single nucleotide polymorphism (SNP) and simple sequence repeat (SSR) markers in pea (Pisum sativum L.)....
Altered pathogenicity, immunogenicity, tissue tropism and 3'-7 kb region sequence of an avian infectious bronchitis coronavirus strain after serial passage in embryos
vian infectious bronchitis coronavirus Pathogenicity Immunogenicity Tissue tropism Genome sequence Serial passage
2016/12/20
In this study, we attenuated a Chinese LX4-type nephropathogenic infectious bronchitis virus (IBV) strain, CK/CH/LHLJ/04V, by serial passage in embryonated chicken eggs. Based on sequence analysis of ...
The Limiting Sequence and Proper Ratio of Lysine, Methionine and Threonine for Calves Fed Milk Replacers Containing Soy Protein*
Limiting Amino Acid Milk Replacers Calf Soy Protein
2016/5/9
The limiting sequence and relative ratio of lysine (Lys), methionine (Met), and threonine (Thr) for calves about 2 mo of age fed milk replacers (MR) containing soy protein are not clearly defined. The...
Sequence analysis of the mtDNA region correlated with Shaan 2A cytoplasmic male sterility in rapeseed (Brassica napus L.)
cytoplasmic male sterility (CMS) marker-assisted selection (MAS) orf224-1 rapeseed (Brassica napus L.) Rf-restorer gene Shaan 2A CMS line
2014/2/25
Until now in Europe has not been cultivated any hybrid cultivar of oilseed rape based on the Shaan 2A cytoplasmic male sterility (CMS), a widely used CMS system in China. The aim of Czech breeders now...